However, the acetyl-CoA synthase gene (acd) involved in acetate formation from acetyl-CoA and vice versa is encoded in all Bathyarchaeota MAGs of this study, with acetate being proposed as possible fermentation end-product (Fig. The analysis of these genomes was published in Saw et al., 2015. were found growing as single cells. eCollection 2020. where to cut orchid stem after bloom; how to reuse keratin hair extensions; raf halton medical centre address is bathyarchaeota multicellularapplebee's ashland menu. Animals: All animals are eukaryotes. facts about bathyarchaeota . McKay LJ, Hatzenpichler R, Inskeep WP, Fields MW. The analysis resulted in the binning of a total of 78 MAGs that met the criteria of a minimum of 50% genome completeness and low contamination rates, i.e., less than 10%. urban league columbus ohio housing list. Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS. long haul trucks with sleepers. However, due to the great diversity of them, there is limited genomic information that accurately encompasses the metabolic potential of the entire archaeal phylum. The simple, single-celled creatures have captured scientists' interest because they are unlike any other organism known to science. Borrel G, Panagiotis S, Gribaldo A, Gribaldo S. Methanogenesis and the WoodLjungdahl pathway: an ancient, versatile, and fragile association. Methylotrophic methanogens everywhere - physiology and ecology of novel players in global methane cycling. Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics. These findings illustrate a large degree of genomic diversity in this Bathyarchaeota group. Before 2016 Apr 4;1(6):16035. doi: 10.1038/nmicrobiol.2016.35. Dr Tyson's group discovered novel methane metabolising organisms belonging to a group of microorganisms, called the Bathyarchaeota - an evolutionarily diverse group of microorganisms found in a . Stimulation of Bathyarchaeota in enrichment cultures by syringaldehyde, 4-hydroxybenzaldehyde and vanillin under anaerobic conditions Author: Dan-Dan Lin, Yi-Fan Liu, Lei Zhou, Shi-Zhong Yang, Ji-Dong Gu, Bo-Zhong Mu Source: International biodeterioration & biodegradation 2022 v.171 pp. Furthermore, a gene encoding the archaeal-specific ammonium (NH4+) transporter (amt), also known from the euryarchaeon Archaeoglobus fulgidus [44], was identified in all MAGs except for the MAG ATB-4. To see what it's like, I flew from the U.S. to Italy to try out the first COVID-tested flight open to American tourists last Sunday. This is in agreement with previous findings described for the Bathyarchaeota MAGs BA1 and BA2 [10], but is controversial to the findings ofHe et al. is bathyarchaeota prokaryotic or eukaryotic 2022-06-08 is bathyarchaeota prokaryotic or eukaryotic is bathyarchaeota prokaryotic or eukaryotic . Just another site. Until now, 25 subgroups have been identified in the Bathyarchaeota. AP participated in the design of this study, contributed to the results and discussion section, and revised the manuscript. BA1, BA2: MAGs determined for samples from coal-bed methane wells within the Surat Basin, Australia [10]; RBG_16_48_13, RBG_13_60_20, RBG_13_38_9, RBG_13_46_16b, RBG_16_57_9, RBG_13_52_12: MAGs determined for groundwater and sediment samples from an aquifer adjacent to the Colorado river near Rifle, USA [35], SG8-32-1, SMTZ-80, DG-45, AD8-1, SG8-32-3, SMTZI-55: MAGs determined for sediment core samples of the White Oak river, USA [34, 4850]; further details on the MAGs are given in Additional file 2. Biomasses such as maize and straw (energy crops) used for AD in biogas plants of this study represent plant materials rich in long-chained carbohydrates such as cellulose, hemicellulose, xylan, and starch, among others, but additionally comprise considerable amounts of proteins. mission hills country club membership cost, how to remove pay range from indeed job posting, did benjamin franklin help write the declaration of independence, How Old Is Chloe From The Thundermans In 2021. MR carried out the taxonomic classification of the microbial communities, performed the metagenome assembly and binning, determined the phylogenetic relationship between the MAGs, contributed to the results and discussion section, and revised the manuscript. Until now, 25 subgroups have been identified in the Bathyarchaeota. Metagenome assemblies followed by a binning approach resulted in the identification of five Bathyarchaeota MAGs which were further analyzed in detail. Metabolic pathways of the Bathyarchaeota members are diverse and, hence, this phylum has been proposed to play an important role in global biogeochemical cycles. 0 Views how to get better graphics on fortnite pc. Vertical Distribution of Bathyarchaeotal Communities in Mangrove Wetlands Suggests Distinct Niche Preference of Bathyarchaeota Subgroup 6. In addition, corresponding transporter systems were identified. It is a type of microorganism that is mostly found in the sediments of water. is bathyarchaeota multicellular Taxonomic classification of the biogas biofilm microbiome members based on metagenome sequence data was accomplished as described previously applying the LCA approach on taxonomically assigned contigs. Candidatus Bathyarchaeota Click on organism name to get more information.. MCG-1 . 1. is bathyarchaeota prokaryotic or eukaryotic. Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. As this kind of information may be due to change quickly, you need to check what applies with relevant authorities before travelling to Sweden. AS, AScz, and MK conceived the study, participated in manuscript coordination, drafted parts of the manuscript, supervised all biological and bioinformatic data analyses, and revised the manuscript. Hydrogenotrophic Archaea utilizing H2 and CO2 often dominate the archaeal sub-communities in biogas-producing systems, while the acetoclastic and methylotrophic methanogens are less abundant [3, 5]. National Library of Medicine 9 Th6 2022 how many trucks does jb hunt have where to find bae juice in woolworths. :-) answer is animalia. 2). arch rock nature trail. Download the book for quality assessment. A comparative study of methylglyoxal metabolism in trypanosomatids. Epub 2022 Sep 6. Mappings of the metagenome data sets onto the assemblies were performed applying bbmap from the BBTools package [21] and were further processed with SAMtools [22]. Tomazetto G, Hahnke S, Koeck DE, Wibberg D, Maus I, Phler A, et al. This indicates a metabolism based on carbohydrate fermentation as it was previously proposed for Bathyarchaeota members originating from other environments [34, 38]. For abundance determination of the taxonomically assigned contigs, the transcripts per million (TPM) was computed based on the mapped sequencing reads per reactor system individually. Individual metagenome assemblies followed by genome binning resulted in the reconstruction of five metagenome-assembled genomes (MAGs) of Bathyarchaeota. However, limited information is available . Name: "Candidatus Bathyarchaeota" Meng et al. Antonie Van Leeuwenhoek. Phylogenetic classification based on core gene sets confirmed their placement within the phylum Bathyarchaeota clustering as a separate group diverging from most of the recently known Bathyarchaeota clusters. Based on the physiological and genomic evidence, acetyl-coenzyme A-centralized heterotrophic pathways of energy conservation have been proposed to function in Bathyarchaeota; these microbes are able to anaerobically utilize (i) detrital proteins, (ii) polymeric carbohydrates, (iii) fatty acids/aromatic compounds, (iv) methane (or short chain alkane) and methylated compounds, and/or (v) potentially other organic matter. . July 4, 2022 is bathyarchaeota multicellulardid benjamin franklin help write the declaration of independencedid benjamin franklin help write the declaration of independence Berben T, Forlano B F, In 't Zandt MH, Yang S, Liebner S, Welte CU. Biochem Soc Trans. Lloyd KG, Schreiber L, Petersen DG, Kjeldsen KU, Lever MA, Stehen AD, et al. The site is secure. From Recharge, to Groundwater, to Discharge Areas in Aquifer Systems in Quebec (Canada): Shaping of Microbial Diversity and Community Structure by Environmental Factors. This approach enables the identification of new and uncharacterized genomes without the availability of reference database entries. Don't let scams get away with fraud. Eukaryotes have a smaller surface area to volume ratio than prokaryotes, and thus have lower metabolic rates and longer generation times. The number of orthologous coding sequences (CDSs) shared by all bins is in the center. 2020 Aug 28;11:2060. doi: 10.3389/fmicb.2020.02060. Predominant archaea in marine sediments degrade detrital proteins. Analyses were performed on metagenomic data using the LCA (lowest common ancestor) algorithm implemented in MEGAN6 [23]. Continuative studies will certainly benefit from the comprehensive genomic information on Bathyarchaeota members from biogas reactor systems by integrating this knowledge into models describing interactions within complex AD communities. All authors read and approved the final manuscript. In contrast to the Bathyarchaeota detected in coal-bed methane wells [10], the Bathyarchaeota in the analyzed biogas reactor biofilms are not able to produce methane via the hitherto known methanogenesis pathway. Insights into the annotated genome sequence of. 1Dept. Communication is required for sharing information, in two senses. A multicellular organism is made of many. The classification of archaea, and of prokaryotes in general, is a rapidly moving and contentious field. Ferretti Group; Beneteau; Sunstream; Vaihtoveneet; Yamaha Center; Yhteystiedot We investigated Baltic Sea sediments with single-cell genomics, metabolomics, metatranscriptomics, and enzyme assays to identify possible subsistence both unicellular and multicellular organisms, the latter of which include Animals, Plants and . HGT is an important factor in the evolution of many organisms. Clipboard, Search History, and several other advanced features are temporarily unavailable. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Acetate and lactate were predicted as possible end-products of the fermentation process. The MAGs ATB-1 (derived from the system 1 dataset) and ATB-2, -3, and -4 (system 3 dataset) were obtained for the thermophilic biofilms, and the MAG ATB-5 (system 2 dataset) was determined for the mesophilic biofilm. HHS Vulnerability Disclosure, Help Other eukaryotes include single-celled fungi like yeasts. The phylogenetic tree is based on all core genes of the selected strains and MAGs from the phyla Euryarchaeota, Korarchaeota, Crenarchaeota, Aigarchaeota, Thaumarchaeota, and Bathyarchaeota as determined by means of phylosift [46, 47] and RAxML version 8.1.16 [30]. In the break-down cascade of macromolecular compounds, methanogenesis is the last step conducted exclusively by methanogenic Archaea of the phylum Euryarchaeota. In contrast, they are separated from the MAGs BA1 and BA2 from a deep aquifer [10], SG8-32-1 (White Oak river habitat, [34] and RBG_13_46_16b (aquifer adjacent to the Colorado river [35]. The core genome of the MAGs analyzed appears to be small, including on average less than 26% of the genes of each MAG. The genetic repertoire of the MAGs analyzed also uncovered their potential to utilize proteins and amino acids as growth substrates which is in line with previous findings [10, 34]. 26 Is . Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. In this study, two different thermophilic (55C, systems 1 and 3) and one mesophilic (37C, system 2) laboratory-scale biogas fermenter systems digesting crop biomass were sampled to determine the presence of Bathyarchaeota members in the microbial biofilms. The most abundant phyla of the bacterial sub-communities in all biofilm samples are the Firmicutes (between 10 and 61%) followed by Proteobacteria (between 1 and 11%), Chloroflexi (between 1 and 10%), and Thermotogae (between 1 and 6%). Acdc-automated contamination detection and confidence estimation for single-cell genome data. Microbial community dynamics in replicate anaerobic digesters exposed sequentially to increasing organic loading rate, acidosis, and process recovery. SJ participated in bioinformatic data analysis, and revised the manuscript. michael todd soniclear beeping. Acetoclastic methanogens utilize the pathway in reverse direction generating energy by converting acetate to methane (CH4) and CO2 [39, 40]. Bathyarchaeota is a diverse, abundant, and widespread archaeal phylum that may play an important role in global carbon cycling. Their size increases with the number of cells in an organism. Furthermore, the position of newly identified MAGs in the phylogenetic tree supports their affiliation to the phylum Bathyarchaeota. Bathyarchaeota are believed to have roles in the carbon cycle in marine systems. The research, titled Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics, . The .gov means its official. vivir para volar, frases nuevas 2021 pandas to csv multi character delimiter. Results In the current study, nine metagenome-assembled genomes of Bathyarchaeota from four subgroups . Contamination and completeness level of the identified Bathyarchaeota MAGs were assessed with CheckM [25] and acdc[26]. However, limited information is available . Microb Ecol. System 2 was constructed similar to system 1 but with a working volume of 27L for the UASS and 22L for the AF [19]. usssa all american softball tryouts 2021. george eliot hospital blood tests; dylan klebold father; 3 point resection surveying Moreover, it represents the smallest Bathyarchaeota MAG among the analyzed bins. Furthermore, the SCG based phylogenetic tree points to the closer relatedness of MAGs ATB-1 and MAG ATB-4 among the five analyzed MAGs. However, all MAGs possess complete sets of genes encoding [NiFe] membrane-bound hydrogenase (Ech), cytoplasmic coenzyme F420-reducing [NiFe]-hydrogenase (Frh), and cytoplasmic [NiFe]-hydrogenase (Mvh) needed for activation of H2 during methanogenesis. Coming to your question. In . This is the first study, in which members of the newly proposed phylum Bathyarchaeota [10] were identified in biotechnological biogas-producing reactor systems digesting crop material. Bacteria is not a multicellular organism. Kang DD, Froula J, Egan R, Wang Z. MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities. denver museum of nature and science prehistoric journey. To phylogenetically classify the Bathyarchaeota MAGs analyzed in relation to members of the domain Archaea, the phylogenetic trees based on concatenated single-copy-genes (SCG) and, in addition, on 16S rRNA genes were constructed. In this context, all genes encoding enzymes involved in asparagine, aspartate, alanine, threonine, glutamate, glutamine, serine, and homoserine degradation into tricarboxylic acid (TCA) cycle intermediates and, additionally, pyruvate were identified (Additional file 7). An official website of the United States government. High abundance and widespread distribution of the archaeal phylum Bathyarchaeota in marine environment have been recognized recently, but knowledge about Bathyarchaeota in terrestrial settings and . Likewise, almost all genes of the V-type Na+/H+-transporting ATPase (atpABCDEFHIK) were also nearly completely detected in the Bathyarchaeota MAGs. facts about bathyarchaeota . This is the first study indicating that Bathyarchaeota members contribute presumably to hydrolysis and subsequent fermentation of organic substrates within biotechnological biogas production processes. June 14, 2021 0 Share No Comments on is bathyarchaeota prokaryotic or eukaryotic . Hydrogenotrophic methanogens use the Eastern/Methyl branch for methane formation as well as the forward direction of the Western/Carbonyl branch for cell carbon assimilation or acetate generation. Don't let scams get away with fraud. Blog Uncategorized is bathyarchaeota multicellular Uncategorized is bathyarchaeota multicellular transformers: power of the primes swoop; mountaingate country club celebrity members; portmore st catherine jamaica; death note boyfriend scenarios when you cuddle Lineage (full): cellular organisms; Archaea; TACK group. Analysis of the Bathyarchaeota MAGs revealed also several genes of the glyoxalase metabolism, a common pathway involved in the conversation of the toxic glycolytic byproduct methylglyoxal to d-lactate [45]. is bathyarchaeota multicellular. Methane metabolism in the archaeal phylum. System 1 was a thermophilic (55C) two-phase, two-stage reactor system consisting of an upflow anaerobic solid-state (UASS) reactor digesting wheat straw as sole substrate and a downstream packed bed anaerobic filter (AF) with working volumes of 39 and 30L, respectively [18]. Transport is required for the movement of resources around a multi-cellular organism. Expression, purification and crystallization of the ammonium transporter Amt-1 from. In particular, the organic-rich sediments of the White Oak River estuary (North Carolina, USA) were described to be abundant in uncultured Archaea, especially members of the phylum Bathyarchaeota [12, 14, 15]. June 14, 2021 0 Share No Comments on is bathyarchaeota prokaryotic or eukaryotic . Therefore, Bathyarchaeota MAGs were screened for genes encoding enzyme involved in protein, peptide, and amino acid transport and metabolism. MAG ATB-1 was the only one harboring genes of the Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) cas system, an adaptive microbial immune system that provides resistance against invasion of phages and mobile elements. These functional categories are of importance for AD, since they are primarily connected with plant biomass degradation. Three laboratory-scaled experimental biogas fermenter systems were sampled. Unable to load your collection due to an error, Unable to load your delegates due to an error. 1000 Genome Project Data Processing Subgroup, 2009. These results were confirmed by a 16S rRNA gene-based phylogenetic tree (Additional file 6), computed with sequences of archaeal members from the SILVA database and the 16S rRNA gene sequences from ATB-1. There are currently two ways of getting closer to the answers: i) Find and study unicellular organisms that are in the process of uniting and forming multicellular structures, and ii) Use artificial evolution and synthetic biology to produce multicellular structures from unicellular organisms. The meaning of MULTICELLULAR is having, made up of, or involving more than one and usually many cells especially of living matter. How to say Bathyarchaeota in English? Crenarchaeal heterotrophy in salt marsh sediments. Irena Maus, Madis Rumming, [], and Michael Klocke. The archaeal phylum Bathyarchaeota, which is composed of a large number of diverse lineages, is widespread and abundant in marine sediments. Moreover, genes encoding heterodisulfide reductase (Hdr) and cytoplasmic [NiFe]-hydrogenase (Mvh) also were identified. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Maus I, Wibberg D, Stantscheff R, Stolze Y, Blom J, Eikmeyer FG, et al. and transmitted securely. In contrast, the biofilms established on the surface of the packings inthe AFs of systems 2 and 3 are assumed to predominantly represent the methanogenic phase. facts about bathyarchaeota. Multicellularity made easy Researchers got single-cell yeast to evolve multicellularity in the lab, demonstrating the relative ease of the transition. Taxonomy - Candidatus Bathyarchaeota (PHYLUM) ))) Map to UniProtKB (389,187) Unreviewed (389,187) TrEMBL. Genes for acetate assimilation mediated by phosphotransacetylase (pta) and acetate kinase (ack) needed for conversion of acetyl-CoA to acetylphosphate and subsequently to acetate were not identified in any of the five MAGs. The vertical distribution of Bathyarchaeota and environmental impact on bathyarchaeotal community in deep-sea and lake sediments are known; however, little information is available on Bathyarchaeota in eutrophic and brackish environments, such as mangrove wetlands. Li D, Luo R, Liu CM, Leung CM, Ting HF, Sadakane K, et al. Determined genes are shown in yellow boxes, determined transport systems are displayed in blue, and missing but presumed transport systems are indicated by gray coloring. Did you know? Little is known about the seasonal dynamic of archaeal communities and their potential ecological functions in temperate seagrass ecosystems. Zaremba-Niedzwiedzka K, Caceres EF, Saw JH, Bckstrm D, Juzokaite L, Vancaester E, et al. Discovery []. In order to determine their metabolic capacity, we reconstructed the genomic content of four widespread uncultured benthic Archaea recovered from estuary sediments at 48% to 95% completeness. Culture independent genomic comparisons reveal environmental adaptations for. Genes involved in nitrite reduction were detected in all Bathyarchaeota subgroups and indicate a potential for dissimilatory nitrite reduction to ammonium. Total archaeal gene-copy numbers increased by about two and three times at t 6 and 11-mo incubation (t 11), while those of Bathyarchaeota climbed to more than 10 times at t 11 compared with the original sample. Metabolic pathways of the Bathyarchaeota members are diverse and, hence, this phylum has been proposed to play an important role in global biogeochemical cycles. Deeper insight into the structure of the anaerobic digestion microbial community; the biogas microbiome database is expanded with 157 new genomes. The aims of the current study were to (1) describe the spatial and vertical distribution of Bathyarchaeota in mangrove wetlands; (2) evaluate the distinctiveness of bathyarchaeotal communities in mangrove wetlands and other ecosystems; and (3) determine the niche preferences of different bathyarchaeotal subgroups, especially Bahty-6, in the For the first time, members of this phylum were identified also in mesophilic and thermophilic biogas-forming biofilms and characterized in detail. espn 710 los angeles lineup changes; 1968 dime no mint mark; louise fletcher orange is the new black; crypto face interview; local focus interview opp The evidence for genes for carbohydrate, protein, and amino acid uptake and degradation indicate that Bathyarchaeota from the analyzed biogas plant share a heterotrophic metabolism. To infer the functional roles of Bathyarchaeota MAGs originating from the sampled biofilms of mesophilic and thermophilic biogas reactor systems, metabolic reconstructions were done focusing on fermentation pathways represented in the KEGG database (Additional file 7). sharing sensitive information, make sure youre on a federal All Courses; About; Blog; Contact Us Thus, strong growth of Bathyarchaeota was achieved only in re-sponse to lignin addition. houston methodist willowbrook cafeteria menu; disadvantages of minimally invasive heart surgery; terry kilburn edmonton. Metagenome shotgun libraries were constructed applying the TruSeq DNA PCR-Free Library Preparation Kit (Illumina) and sequenced on the Illumina MiSeq system utilizing the V2 kit chemistry (Illumina). Seemann T. Prokka: rapid prokaryotic genome annotation. of Archaea, particularly Bathyarchaeota. Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants. MRs contribution has been made possible through the German-Canadian DFG international research training group Computational Methods for the Analysis of the Diversity and Dynamics of Genomes (DiDy), Grant Number GRK 1906/1. Unicellular vs Multicellular | Cells | Biology | FuseSchoolDid you know that some organisms exist of just one cell? The five Bathyarchaeota MAGs determined for the microbial biofilms residing in mesophilic and thermophilic biogas reactors were compared using the EDGAR software [36] in order to calculate the set of MAG-specific and shared protein-coding genes. The SCG phylogenetic tree was built with 14 MAGs assigned previously to the phylum Bathyarchaeota or to MCG (Additional file 2), respectively, and 128 archaeal genomes selected from IMG/M [29]. Epub 2022 Aug 10. Among the archaeal sequences obtained for biofilms of the reactor systems 1, 2 and 3, 0.1, 2, and 2%, respectively, were classified to represent the phylum Bathyarchaeota. Bathyarchaeota are among the most abundant and active groups of microorganisms in marine sediment. The Polar Fox Lagoon in Siberia harbours a community of Bathyarchaeota possessing the potential for peptide fermentation and acetogenesis. Previous studies on the Miscellaneous Crenarchaeota Group, recently assigned to the novel archaeal phylum Bathyarchaeota, reported on the dominance of these Archaea within the anaerobic carbohydrate cycle performed by the deep marine biosphere. To characterize the microbial community compositions in these biofilms, high-throughput whole microbial metagenome sequencing was performed. Grissa I, Vergnaud G, Pourcel C. The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. Rademacher A, Zakrzewski M, Schlter A, Schnberg M, Szczepanowski R, Goesmann A, et al. Community, Distribution, and Ecological Roles of Estuarine Archaea. Both unicellular and multicellular organisms the latter of which include Animals Plants and Fungi that make up the visible biosphere. Lloyd KG, Alperin MJ, Teske A. is bathyarchaeota multicellular is bathyarchaeota multicellular. 8600 Rockville Pike Members of the phylum Euryarchaeota are abundant in all microbiomes analyzed, representing between 4% (in the thermophilic cellulolytic/hydrolytic biofilm of system 1) and 21% (in system 3) of all classified metagenome sequences. System 3 was constructed, operated, and sampled similar to system 2 but in this case, the entire system was operated at 55C. Pohl M, Heeg K, Mumme J. Anaerobic digestion of wheat straw-performance of continuous solid-state digestion. Yu T, Wu W, Liang W, Lever MA, Hinrichs KU, Wang F. Proc Natl Acad Sci U S A. Metabolic pathways of the Bathyarchaeota members are diverse and, hence, this phylum has been proposed to play an important role in global biogeochemical cycles. Stolze Y, Zakrzewski M, Maus I, Eikmeyer F, Jaenicke S, Rottmann N, et al. The authors thank the Fachagentur fr Nachwachsende Rohstoffe (FNR) and Projekttrger Jlich (PTJ) for their valuable support in project management. NCBI Resource Coordinators Database resources of the national center for biotechnology information. Additionally, to identify unique genes, present only in Bathyarchaeota members originating from biogas reactor environments, the core genome of the MAGs ATB-1 to 5 was compared with the pan genome of fourteen other Bathyarchaeota MAGs (for details see Fig.
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